PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 228aa    MW: 25606.4 Da    PI: 5.0152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33280genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.7e-5361431128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
               lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+ ++++    
  EMT33280   6 LPPGFRFHPTDEELVNYYLKRKIHGLHIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRVMTQQhhgg 105
               79****************************.99**************84335556888**********************************999988877 PP

       NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +++g+kktLv+y+grap+g++tdWvmheyrl
  EMT33280 106 ggaggGARAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 143
               777665666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-624167IPR003441NAC domain
PROSITE profilePS5100558.8646166IPR003441NAC domain
PfamPF023655.8E-307143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LHIELDIIPE VDLYKCEPWD LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRVMTQ QHHGGGGAGG GARAIGMKKT  120
LVYYRGRAPQ GVRTDWVMHE YRLDDKDSED TIAIQDTYAL CRVFKKNAIC AEEYYQTPSP  180
DVPAGSTSGG ADADADDDAD KDDSWMQFIS EDAWCSSTAA EESTSCAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B3e-51116812167NAC domain-containing protein 19
4dul_A3e-51116812167NAC domain-containing protein 19
1ut7_B3e-51116812167NO APICAL MERISTEM PROTEIN
1ut7_A3e-51116812167NO APICAL MERISTEM PROTEIN
1ut4_B3e-51116812167NO APICAL MERISTEM PROTEIN
1ut4_A3e-51116812167NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514930.0AK251493.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127o16, mRNA sequence.
GenBankAK3595070.0AK359507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1098E06.
GenBankAK3610300.0AK361030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130O02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653037.11e-132PREDICTED: NAC domain-containing protein 74-like
SwissprotA4VCM03e-82NAC45_ARATH; NAC domain-containing protein 45
TrEMBLM8C7K21e-172M8C7K2_AEGTA; NAC domain-containing protein 74
STRINGMLOC_37843.11e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-103NAC domain containing protein 57